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Mouse linkage scans are performed using the Illumina GigaMUGA array, developed at the University of North Carolina at Chapel Hill under the supervision of Fernando Pardo-Manuel de Villena and Leonard McMillan. The GigaMUGA array consists of >140,000 probes with average spacing of 22.5kb. Selection of probes for this array was based on 159 inbred lines.
A complete description of GigaMUGA can be found at: The Mouse Universal Genotyping Array: from substrains to subspecies. Andrew P Morgan, Chen-Ping Fu, Katy Kao, John P Didion, Liran Yadgary, Leeanna Hyacinth, Martin T Ferris, Timothy A Bell, Darla R Miller, Jason Whitmire, Paola Giusti, Randal J Nonneman, Lisa E Gralinski, Alan D Attie, Gary A Churchill, Petko Petkov, Patrick F Sullivan, Jennifer R Brennan, Leonard McMillan, Fernando Pardo-Manuel de Villena. G3, Genes, Genomes, Genetics (2015).