Custom SNP Genotyping

96 to 1,000,000 investigator-chosen SNPs can be assayed per sample using Illumina’s technologies. Depending on the number of custom SNPs desired and the sample number to be assayed, the platform used is either VeraCode, GoldenGate or Infinium.

 

Supported Organisms

• Human
• Mouse
• Other – please inquire about other organisms

Study Designs

• Replication of Genome Wide Association study
• Fine mapping
• Positional or functional candidate gene

Custom Array Option Details

• Investigator-defined density and location
• Selection by investigator, assistance available
• Mouse SNP selection resource:  Genotypes for 480 mouse strains and >13,000 Illumina-validated SNPs are publicly available along with SNP selection tools at Wellcome-CTC Mouse Strain Genotype Set

 

Platform	SNPs per Sample	Factors to Consider
VeraCode	96 or 384	Pricing does not include sample pretesting
GoldenGate	1,536 or 3,072	Tolerant of lower quality DNA samples
Infinium	3,000 - 1,000,000	Not recommended for WGA or highly degraded DNAs. Illumina only guarantees 80% manufacturing success of designed content.

 

 

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See our Services page for a full description of what is included for all study types

 

 

Sample Requirements