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Quality Control Statistics
CIDR is dedicated to producing the highest quality data for our investigators. These cumulative quality control statistics are based on data from 345 released CIDR Program studies consisting of ~466,000 samples. The error rate is calculated from investigator-supplied blind duplicates.
Service |
Error Rate |
Missing Rate |
|
| Whole Exome Sequencing* | 0.1 | 7.7 | |
| GWAS SNP - Illumina | 0.015 | 0.20 | |
| Linkage SNP | 0.007 | 0.19 | |
| Custom SNP - GoldenGate | 0.009 | 0.18 | |
| Custom SNP - iSelect Infinium | 0.0003 | 0.03 | |
| Linkage STRP** | 0.07 | 3.96 | |
*Missing rate defined as the % of targeted bases not covered by minimum depth to call SNPs |
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**CIDR no longer offers STRP services |
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Genetic Analysis staff Mary Jewell, Ivy McMullen and Jie Zhang