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Quality Control Statistics

 

CIDR is dedicated to producing the highest quality data for our investigators. These cumulative quality control statistics are based on data from 419 released CIDR Program studies consisting of ~925,000 samples. The error rate is calculated from investigator-supplied blind duplicates.

 

Service

Error Rate
(%)

Missing Rate
(%)

Custom Targeted Sequencing* .1 3.0
Whole Exome Sequencing* 0.5 3.0
GWAS SNP - Illumina 0.015 0.20
Linkage SNP 0.007 0.19
Custom SNP - GoldenGate** 0.009 0.18
Custom SNP - iSelect Infinium 0.0003 0.03
Linkage STRP** 0.07 3.96

*Missing rate defined as the % of targeted bases not covered by minimum depth to call SNPs

**CIDR no longer offers these services

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


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photo of statgen staff

 

Genetic Analysis staff including Ivy McMullen and Jie Zhang