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CIDR offers high (30X) and low pass whole genome services. Please inquire if you have a low pass project in mind.
Next Generation Sequencing PlatformIllumina HiSeq sequencers
Low pass whole genome sequencing at CIDR
Applicants can use CIDR sequencing and genotyping services in designing the study. In general, CIDR would expect to run a standard Illumina genotyping array on all samples sequenced. CIDR and investigator technical replicates would be sequenced. Initial sample and variant QC would be based on multi-sample calling and comparison to array genotypes. We may be able to support additional project-specific calling and imputation methods prior to data release. Release would include array genotypes, BAM files, multi-sample VCF files, QC reports and variant annotation etc. Consulting and/ or assistance with posting to dbGaP in association with University of Washington Genetics Coordinating Center (GCC) may also be possible.
Please inquire with any questions about specific issues for your proposed study.
In most cases, it is expected that all samples will be collected and phenotyped before applying for the NIH CIDR Program. Possible exceptions should be discussed with CIDR and the NIH supporting institute before applying.
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